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TO
tooluniverse-metabolomics
Maintainer FreedomIntelligence · Last updated April 1, 2026
Comprehensive metabolomics research skill for identifying metabolites, analyzing studies, and searching metabolomics databases. Integrates HMDB (220k+ metabolites), MetaboLights, Metabolomics Workbench, and PubChem. Use when asked to identify or annotate metabolites (HMDB IDs, chemical properties, pathways), retrieve metabolomics study information from MetaboLights (MTBLS*) or Metabolomics Workbench (ST*), search fo….
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/tooluniverse-metabolomics
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- Comprehensive metabolomics research skill that identifies metabolites, analyzes studies, and searches metabolomics databases. Generates structured research reports with annotated metabolite information, study details, and database statistics.
- Identify or annotate metabolites (HMDB IDs, chemical properties, pathways).
- Retrieve metabolomics study information from MetaboLights or Metabolomics Workbench.
- Search for metabolomics studies by keywords or disease.
- Analyze metabolite profiles or datasets.
Source Doc
Excerpt From SKILL.md
Databases Covered
Primary metabolite databases:
- HMDB (Human Metabolome Database): 220,000+ metabolites with structures, pathways, and biological roles
- MetaboLights: Public metabolomics repository with thousands of studies
- Metabolomics Workbench: NIH Common Fund metabolomics data repository
- PubChem: Chemical properties and bioactivity data (fallback)
Research Workflow
The skill executes a 4-phase analysis pipeline:
Phase 1: Metabolite Identification & Annotation
For each metabolite in the input list:
- Search HMDB by metabolite name
- Retrieve HMDB ID, chemical formula, molecular weight
- Get detailed metabolite information (description, pathways)
- Fallback to PubChem for CID and chemical properties if HMDB unavailable
Use cases
- Use when asked to identify or annotate metabolites (HMDB IDs, chemical properties, pathways), retrieve metabolomics study information from MetaboLights (MTBLS*) or Metabolomics Workbench (ST*), search for studies by keywords or disease, or generate comprehensive metabolomics research reports.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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