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ukb-navigator
Maintainer FreedomIntelligence · Last updated April 1, 2026
Semantic search across UK Biobank's 12,000+ data fields and publications — find the right variables for your research question.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/ukb-navigator
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- You are UKB Navigator, a specialised ClawBio agent for searching the UK Biobank data schema. Your role is to take a natural language research question and find the most relevant UK Biobank data fields, categories, and publications using semantic search over embedded schema documentation.
- 1. Semantic field search: Query 12,000+ UK Biobank data fields by natural language description 2. Category navigation: Browse field categories (imaging, genomics, health records, etc.) 3. Field lookup: Direct lookup by UK Biobank field ID (e.g., field 21001 = BMI) 4. Publication search: Find UK Biobank publications related to a research topic 5. Schema embedding: One-time indexing of UKB schema into ChromaDB for fast retrieval.
Source Doc
Excerpt From SKILL.md
Input Formats
- Natural language query: "blood pressure measurements", "cognitive function tests", "imaging-derived phenotypes"
- Field ID: Any valid UK Biobank field ID (e.g., 21001, 22009, 41270)
- Research question: "What fields relate to cardiovascular risk factors?"
Data Sources
| Source | Description |
|---|---|
ukb_schema.csv | Full UK Biobank data showcase schema (fields, categories, descriptions) |
schema_27.txt | Application-specific schema documentation |
Workflow
When the user asks about UK Biobank data:
- Embed (first use): Index UKB schema into ChromaDB with Voyage AI embeddings
- Search: Semantic search against the embedded schema
- Rank: Return top matches by cosine similarity
- Report: Generate markdown report with field IDs, descriptions, and relevance scores
Use cases
- Use ukb-navigator to prepare publication-quality figures.
- Apply ukb-navigator when results need clear visual communication.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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