数据与复现科研绘图与可视化FreedomIntelligence/OpenClaw-Medical-Skills数据与复现

bio-data-visualization-upset-plots

维护者 FreedomIntelligence · 最近更新 2026年4月1日

bio-data-visualization-upset-plots：UpSet plots ，用于 multi-set intersection visualization。

OpenClawNanoClaw分析处理写作整理bio-data-visualization-upset-plots🧠 bioos extended suitebioos extended bioinformatics suiteupset

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-data-visualization-upset-plots

维护者: FreedomIntelligence
许可: MIT
最近更新: 2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

upset(fromExpression(data)，order.by = 'freq'，nsets = 6)。
gene_sets <- list( SetA = c('Gene1'，'Gene2'，'Gene3'，'Gene4')，SetB = c('Gene2'，'Gene3'，'Gene5'，'Gene6')，SetC = c('Gene1'，'Gene3'，'Gene6'，'Gene7')，SetD = c('Gene3'，'Gene4'，'Gene7'，'Gene8') ) upset(fromList(gene_sets)，order.by = 'freq'，nsets = 4)。

原始文档

SKILL.md 摘录

Customized appearance

upset(fromList(gene_sets), nsets = 6, nintersects = 40, order.by = 'freq', decreasing = TRUE, mb.ratio = c(0.6, 0.4), # Matrix to bar ratio point.size = 3, line.size = 1.5, mainbar.y.label = 'Intersection Size', sets.x.label = 'Set Size', text.scale = c(1.5, 1.3, 1.3, 1, 1.5, 1.3), set_size.show = TRUE, set_size.scale_max = 500)

Custom set colors

upset(fromList(gene_sets), sets.bar.color = c('#E64B35', '#4DBBD5', '#00A087', '#3C5488'), main.bar.color = '#7E6148', matrix.color = '#7E6148')


## Highlight specific intersections

upset(fromList(gene_sets),
      order.by = 'freq',
      queries = list(
          list(query = intersects,
               params = list('SetA', 'SetB'),
               color = '#E64B35',
               active = TRUE),
          list(query = intersects,
               params = list('SetA', 'SetC', 'SetD'),
               color = '#4DBBD5',
               active = TRUE)
      ))

适用场景

Use bio-data-visualization-upset-plots to prepare 论文级图表。
Apply bio-data-visualization-upset-plots when results need clear visual communication。

不适用场景

Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。

上游相关技能

data-visualization/heatmaps-clustering - Alternative for smaller sets
pathway-analysis/enrichment-visualization - Gene set overlaps
differential-expression/de-results - DE gene set comparisons

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