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数据与复现
BI
bio-entrez-fetch
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Fetch records from NCBI Entrez by accession or UID.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-entrez-fetch
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- 获取 records ，面向 NCBI databases ，使用 Biopython's Entrez module (EFetch，ESummary utilities)。
- handle = Entrez.efetch(db='nucleotide'，id='NM_007294'，rettype='gb'，retmode='text') genbank_text = handle.read() handle.close()。
原始文档
SKILL.md 摘录
Entrez.efetch() - Retrieve Full Records
Fetch complete records in various formats from any NCBI database.
## Fetch FASTA sequence
handle = Entrez.efetch(db='nucleotide', id='NM_007294', rettype='fasta', retmode='text')
fasta_text = handle.read()
handle.close()
## Fetch multiple records
handle = Entrez.efetch(db='nucleotide', id='NM_007294,NM_000059', rettype='fasta', retmode='text')
Key Parameters:
| Parameter | Description | Example |
|---|---|---|
db | Database name | 'nucleotide', 'protein', 'pubmed' |
id | Record ID(s) | 'NM_007294' or '123,456,789' |
rettype | Return type | 'fasta', 'gb', 'abstract' |
retmode | Return mode | 'text', 'xml' |
retstart | Start index | 0 |
retmax | Max records | 20 |
WebEnv | History server session | From esearch |
query_key | History server query | From esearch |
适用场景
- Use bio-entrez-fetch ，用于 genomics 、 bioinformatics workflows。
- Apply bio-entrez-fetch to sequencing，variant，或 omics analysis tasks。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
上游相关技能
- entrez-search - Find record IDs before fetching
- entrez-link - Find related records in other databases
- batch-downloads - Download large numbers of records efficiently
- sequence-io/read-sequences - Parse downloaded sequences with SeqIO
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