数据与复现科研数据库FreedomIntelligence/OpenClaw-Medical-Skills数据与复现

bio-entrez-link

维护者 FreedomIntelligence · 最近更新 2026年4月1日

bio-entrez-link：获取 linked records across NCBI Entrez databases。

OpenClawNanoClaw选题发现数据建库bio-entrez-link🧠 bioos extended suitebioos extended bioinformatics suiteretrieve

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-entrez-link

维护者: FreedomIntelligence
许可: MIT
最近更新: 2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

Navigate between NCBI databases ，使用 Biopython's Entrez module (ELink utility)。
handle = Entrez.elink(dbfrom='gene'，db='protein'，id='672') record = Entrez.read(handle) handle.close()。

原始文档

SKILL.md 摘录

Entrez.elink() - Cross-Database Links

Find related records in the same or different databases.


## Extract linked IDs

linkset = record[0]
if linkset['LinkSetDb']:
    links = linkset['LinkSetDb'][0]['Link']
    protein_ids = [link['Id'] for link in links]
    print(f"Found {len(protein_ids)} linked proteins")

Key Parameters:

Parameter	Description	Example
`dbfrom`	Source database	`'gene'`
`db`	Target database	`'protein'`
`id`	Source record ID(s)	`'672'` or `'672,675'`
`linkname`	Specific link type	`'gene_protein_refseq'`
`cmd`	Link command	`'neighbor'`, `'neighbor_score'`

Gene to Other Databases

From	To	Link Name	Description
gene	protein	`gene_protein`	All proteins
gene	protein	`gene_protein_refseq`	RefSeq proteins only
gene	nucleotide	`gene_nuccore`	Nucleotide sequences
gene	nucleotide	`gene_nuccore_refseqrna`	RefSeq mRNA
gene	pubmed	`gene_pubmed`	Related publications
gene	homologene	`gene_homologene`	Homologs
gene	snp	`gene_snp`	SNPs in gene
gene	clinvar	`gene_clinvar`	Clinical variants