数据与复现蛋白结构与设计FreedomIntelligence/OpenClaw-Medical-Skills数据与复现

bio-entrez-search

维护者 FreedomIntelligence · 最近更新 2026年4月1日

Search NCBI Entrez databases (PubMed, gene, nucleotide, protein, SRA).

OpenClawNanoClaw分析处理复现实验bio-entrez-search🧠 bioos extended suitebioos extended bioinformatics suitesearch

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-entrez-search

维护者: FreedomIntelligence
许可: MIT
最近更新: 2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

检索 NCBI databases ，使用 Biopython's Entrez module (ESearch，EInfo，EGQuery utilities)。
handle = Entrez.einfo() record = Entrez.read(handle) handle.close() print(record['DbList']) # ['pubmed'，'protein'，'nucleotide'，...]。

原始文档

SKILL.md 摘录

Entrez.esearch() - Search a Database

Search any NCBI database and get matching record IDs.

Key Parameters:

Parameter	Description	Default
`db`	Database to search	Required
`term`	Search query	Required
`retmax`	Max IDs to return	20
`retstart`	Starting index (pagination)	0
`usehistory`	Store results on server	'n'
`sort`	Sort order	database-specific
`datetype`	Date field to search	'pdat'
`reldate`	Records from last N days	None
`mindate`	Start date (YYYY/MM/DD)	None
`maxdate`	End date (YYYY/MM/DD)	None

ESearch Result Fields:

Entrez.einfo() - Database Information

Get information about available databases or specific database fields.


## Get info about specific database

handle = Entrez.einfo(db='nucleotide')
record = Entrez.read(handle)
handle.close()

print(f"Description: {record['DbInfo']['Description']}")
print(f"Record count: {record['DbInfo']['Count']}")