数据与复现生物信息与基因组学FreedomIntelligence/OpenClaw-Medical-Skills数据与复现

bio-genome-assembly-long-read-assembly

维护者 FreedomIntelligence · 最近更新 2026年4月1日

De novo assembly from ONT/PacBio long reads with Flye or Canu.

OpenClawNanoClaw分析处理复现实验bio-genome-assembly-long-read-assembly🧠 bioos extended suitebioos extended bioinformatics suitede

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-genome-assembly-long-read-assembly

技能摘要

2 min

Assemble genomes ，面向 Oxford Nanopore (ONT) 或 PacBio long reads ，用于 highly contiguous assemblies。
flye --nano-raw reads.fastq.gz --out-dir flye_output --threads 16。

原始文档

Tool	Speed	Memory	Best For
Flye	Fast	Moderate	General purpose, bacteria, ONT
Canu	Slow	High	High accuracy, complex genomes
Wtdbg2	Very fast	Low	Draft assemblies

Note: For PacBio HiFi data, see the dedicated hifi-assembly skill which covers hifiasm.

flye --pacbio-raw reads.fastq.gz --out-dir flye_output --threads 16

flye --pacbio-hifi reads.fastq.gz --out-dir flye_output --threads 16

Use bio-genome-assembly-long-read-assembly ，用于 genomics 、 bioinformatics workflows。
Apply bio-genome-assembly-long-read-assembly to sequencing，variant，或 omics analysis tasks。