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数据与复现
BI
bio-genome-intervals-proximity-operations
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Find nearest features and compute distances between intervals.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-genome-intervals-proximity-operations
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- Operations ，用于 finding nearby features 、 extending intervals ，使用 bedtools 、 pybedtools。
- bedtools closest - peaks.bed -b genes.bed > peaks_with_nearest.bed。
原始文档
SKILL.md 摘录
Report distance to nearest feature
bedtools closest -a peaks.bed -b genes.bed -d > with_distance.bed
Ignore overlapping features (find next nearest)
bedtools closest -a peaks.bed -b genes.bed -io > nearest_non_overlap.bed
Ignore features on different strands
bedtools closest -a peaks.bed -b genes.bed -s > same_strand.bed
适用场景
- Use bio-genome-intervals-proximity-operations ，用于 genomics 、 bioinformatics workflows。
- Apply bio-genome-intervals-proximity-operations to sequencing，variant，或 omics analysis tasks。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
上游相关技能
- bed-file-basics - BED format fundamentals
- interval-arithmetic - intersect, subtract, merge
- gtf-gff-handling - Extract TSS from annotations
- chip-seq/peak-annotation - Peak annotation
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