Metabolite identification from m/z and retention time. Covers database matching, MS/MS spectral matching, and confidence…
FreedomIntelligence/OpenClaw-Medical-Skills查看
数据与复现
BI
bio-metabolomics-lipidomics
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Specialized lipidomics analysis for lipid identification, quantification, and pathway interpretation. Covers LC-MS lipidomics with LipidSearch, MS-DIAL, and LipidMaps annotation. Use when analyzing lipid classes, chain composition, or lipid-specific pathways.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-metabolomics-lipidomics
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- R：lipidr：：as_lipidomics_experiment()，de_analysis()。
- CLI：MS-DIAL 或 LipidSearch ，用于 lipid identification。
- 分析 my lipidomics data" → Identify 、 quantify lipid species by class 、 chain composition，then perform differential lipid analysis 、 pathway interpretation. R：lipidr：：as_lipidomics_experiment()，de_analysis() CLI：MS-DIAL 或 LipidSearch ，用于 lipid identification。
- lipid_data <- read_lipidomes('lipidsearch_export.csv'，data_type = 'LipidSearch')。
原始文档
SKILL.md 摘录
R Workflow with lipidr
library(lipidr)
library(ggplot2)
## Or from generic matrix
lipid_data <- as_lipidomics_experiment(
data = intensity_matrix,
sample_info = sample_metadata,
lipid_info = lipid_annotations
)
## Data summary
print(lipid_data)
plot_samples(lipid_data, type = 'tic')
适用场景
- 适合在analyzing lipid classes，chain composition，或 lipid-specific pathways时使用。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
上游相关技能
- xcms-preprocessing - Peak detection for lipidomics
- metabolite-annotation - General annotation methods
- statistical-analysis - Multivariate analysis
- pathway-mapping - Lipid pathway enrichment
相关技能
相关技能
MS-DIAL-based metabolomics preprocessing as alternative to XCMS. Covers peak detection, alignment, annotation, and expor…
FreedomIntelligence/OpenClaw-Medical-Skills查看
Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Perform pathway enrichment and topology…
FreedomIntelligence/OpenClaw-Medical-Skills查看
Targeted metabolomics analysis using MRM/SRM with standard curves. Covers absolute quantification, method validation, an…
FreedomIntelligence/OpenClaw-Medical-Skills查看