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bio-metabolomics-pathway-mapping

维护者 FreedomIntelligence · 最近更新 2026年4月1日

Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Perform pathway enrichment and topology analysis. Use when interpreting metabolomics results in the context of biochemical pathways.

OpenClawNanoClaw分析处理复现实验bio-metabolomics-pathway-mapping🧬 bioinformatics (gptomics bio-* suite)bioinformatics — proteomics & metabolomicsmap

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-metabolomics-pathway-mapping

维护者
FreedomIntelligence
许可
MIT
最近更新
2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

  • R：MetaboAnalystR：：SetMetabolomeFilter() → PerformDetailMatch() → pathway topology。
  • 映射 my metabolites to pathways" → Perform pathway enrichment 、 topology analysis ，使用 KEGG，Reactome，或 MetaboAnalyst to interpret metabolomics results in biochemical context. R：MetaboAnalystR：：SetMetabolomeFilter() → PerformDetailMatch() → pathway topology。
  • mSet <- InitDataObjects('conc'，'pathora'，FALSE)。

原始文档

SKILL.md 摘录

KEGG Pathway Enrichment

library(MetaboAnalystR)

## Set organism

mSet <- SetOrganism(mSet, 'hsa')  # Human

## Load metabolite list (HMDB IDs or compound names)

metabolites <- c('HMDB0000001', 'HMDB0000005', 'HMDB0000010')  # Example HMDB IDs

适用场景

  • 适合在interpreting metabolomics results in context of biochemical pathways时使用。

不适用场景

  • Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。

上游相关技能

  • metabolite-annotation - Identify metabolites first
  • statistical-analysis - Get significant metabolites
  • pathway-analysis/kegg-pathways - Similar enrichment concepts for genes

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