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数据与复现临床医学与医药FreedomIntelligence/OpenClaw-Medical-Skills数据与复现
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bio-metagenomics-amr-detection

维护者 FreedomIntelligence · 最近更新 2026年4月1日

Detect antimicrobial resistance genes using AMRFinderPlus, ResFinder, and CARD. Screen isolates and metagenomes for resistance determinants. Use when characterizing resistance profiles in clinical isolates, surveillance samples, or metagenomic data.

OpenClawNanoClaw分析处理复现实验bio-metagenomics-amr-detection🧬 bioinformatics (gptomics bio-* suite)bioinformatics — metagenomics & microbiomedetect

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-metagenomics-amr-detection

维护者
FreedomIntelligence
许可
MIT
最近更新
2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

  • CLI：amrfinder -n assembly.fasta --organism Escherichia (AMRFinderPlus)。
  • CLI：ResFinder，CARD/RGI ，用于 alternative database searches。
  • Screen my isolates ，用于 antibiotic resistance genes" → Identify antimicrobial resistance determinants in bacterial genomes 或 metagenomes by searching against curated resistance gene databases. CLI：amrfinder -n assembly.fasta --organism Escherichia (AMRFinderPlus) CLI：ResFinder，CARD/RGI ，用于 alternative database searches。
  • Identify antimicrobial resistance (AMR) genes in bacterial genomes 、 metagenomes。
  • amrfinder -n contigs.fasta -o amr_results.tsv --threads 8。

原始文档

SKILL.md 摘录

Tool Comparison

ToolDatabaseBest For
AMRFinderPlusNCBIComprehensive, curated
ResFinderCGEClinical isolates
CARD/RGICARDDetailed resistance mechanisms
ABRicateMultipleQuick screening

With organism for point mutations

amrfinder -n contigs.fasta -O Escherichia -o amr_results.tsv

Include stress/virulence genes

amrfinder -n contigs.fasta -O Salmonella --plus -o amr_results.tsv

适用场景

  • 适合在characterizing resistance profiles in clinical isolates，surveillance samples，或 metagenomic data时使用。

不适用场景

  • Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。

上游相关技能

  • metagenomics/kraken-classification - Taxonomic context
  • metagenomics/functional-profiling - Functional pathways
  • genome-assembly/contamination-detection - Sample QC
  • workflows/metagenomics-pipeline - Full metagenomics workflow

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