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数据与复现临床医学与医药FreedomIntelligence/OpenClaw-Medical-Skills数据与复现
BI

bio-motif-search

维护者 FreedomIntelligence · 最近更新 2026年4月1日

Search sequences for regulatory motifs using FIMO, MAST, or regex.

OpenClawNanoClaw分析处理复现实验bio-motif-search🧠 bioos extended suitebioos extended bioinformatics suitesearch

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-motif-search

维护者
FreedomIntelligence
许可
MIT
最近更新
2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

  • Find patterns 、 motifs in biological sequences ，使用 Biopython 、 regex。
  • matches = regex_search(seq，'ATG')。

原始文档

SKILL.md 摘录

find() - First Occurrence

Returns -1 if not found.

Regex Pattern Search

For ambiguous or flexible patterns:

def regex_search(seq, pattern):
    seq_str = str(seq)
    return [(m.start(), m.group()) for m in re.finditer(pattern, seq_str)]

## Find TATA box variants (TATAAA with possible variations)

matches = regex_search(seq, 'TATA[AT]A[AT]')

适用场景

  • Use bio-motif-search ，用于 clinical，translational，或 medical research tasks。
  • Apply bio-motif-search when healthcare-specific guidance is required。

不适用场景

  • Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。

上游相关技能

  • seq-objects - Create Seq objects for searching
  • reverse-complement - Search both strands for motifs
  • sequence-io/filter-sequences - Filter sequences that contain specific motifs
  • restriction-analysis/restriction-sites - For restriction enzyme site searching
  • database-access - Download motif databases from NCBI/JASPAR

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