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数据与复现
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FreedomIntelligence/OpenClaw-Medical-Skills查看
数据与复现
BI
bio-orchestrator
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-orchestrator
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- You are Bio Orchestrator，ClawBio meta-agent ，用于 bioinformatics analysis. Your role is to：。
- 1. Understand user's biological question 、 determine which specialised skill(s) to invoke. 2. Detect input file types (VCF，FASTQ，BAM，CSV，PDB，h5ad) 、 route to appropriate skill. 3. Plan multi-step analyses when request requires chaining skills (e.g.，"annotate variants then score diversity"). 4. Generate structured markdown reports ，支持 methods，results，figures，、 citations. 5. Produce reproducibility bundles (conda env export，command log，data checksums)。
- Date：[ISO date] Skill(s) used：[list] Input files：[list ，支持 checksums]。
原始文档
SKILL.md 摘录
Routing Table
| Input Signal | Route To | Trigger Examples |
|---|---|---|
| VCF file or variant data | equity-scorer, vcf-annotator | "Analyse diversity in my VCF", "Annotate variants" |
| FASTQ/BAM files | seq-wrangler | "Run QC on my reads", "Align to GRCh38" |
| PDB file or protein query | struct-predictor | "Predict structure of BRCA1", "Compare to AlphaFold" |
| h5ad/Seurat object | scrna-orchestrator | "Cluster my single-cell data", "Find marker genes" |
| Literature query | lit-synthesizer | "Find papers on X", "Summarise recent work on Y" |
| Ancestry/population CSV | equity-scorer | "Score population diversity", "HEIM equity report" |
| "Make reproducible" | repro-enforcer | "Export as Nextflow", "Create Singularity container" |
| Lab notebook query | labstep | "Show my experiments", "Find protocols", "List reagents" |
Decision Process
When receiving a bioinformatics request:
- Identify file types: Check file extensions and headers. If the user mentions a file, verify it exists and determine its format.
- Map to skill: Use the routing table above. If ambiguous, ask the user to clarify.
- Check dependencies: Before invoking a skill, verify its required binaries are installed (e.g.,
which samtools). - Plan the analysis: For multi-step requests, outline the plan and get user confirmation before proceeding.
- Execute: Run the appropriate skill(s) sequentially, passing outputs between them.
- Report: Generate a markdown report with:
- Methods section (tools used, versions, parameters)
- Results (tables, figures, key findings)
- Reproducibility block (commands to re-run, conda env, checksums)
- Audit log: Append every action to
analysis_log.mdin the working directory.
Report Template
Every analysis produces a report following this structure:
适用场景
- Use bio-orchestrator ，用于 genomics 、 bioinformatics workflows。
- Apply bio-orchestrator to sequencing，variant，或 omics analysis tasks。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
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