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bio-phylo-modern-tree-inference

维护者 FreedomIntelligence · 最近更新 2026年4月1日

Maximum likelihood tree inference with IQ-TREE 2 or FastTree.

OpenClawNanoClaw分析处理复现实验bio-phylo-modern-tree-inference🧠 bioos extended suitebioos extended bioinformatics suitemaximum

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-phylo-modern-tree-inference

维护者
FreedomIntelligence
许可
MIT
最近更新
2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

  • 构建 maximum likelihood phylogenetic trees ，支持 automatic model selection 、 ultrafast bootstrap。
  • iqtree2 -s alignment.fasta -m MFP -B 1000 -T AUTO。

原始文档

SKILL.md 摘录

IQ-TREE2 Output Files

FileDescription
.treefileBest ML tree in Newick format
.iqtreeFull analysis report with model parameters
.logRun log
.contreeConsensus tree with bootstrap support
.splits.nexBootstrap splits in Nexus format
.model.gzModel parameters
.bionjInitial BIONJ tree
.mldistML distance matrix
.ckp.gzCheckpoint file for resuming

ModelFinder only (no tree inference)

iqtree2 -s alignment.fasta -m MF

Use specific model

iqtree2 -s alignment.fasta -m GTR+G4 -B 1000

适用场景

  • Use bio-phylo-modern-tree-inference ，用于 genomics 、 bioinformatics workflows。
  • Apply bio-phylo-modern-tree-inference to sequencing，variant，或 omics analysis tasks。

不适用场景

  • Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。

上游相关技能

  • tree-io - Read and convert output tree files
  • tree-visualization - Visualize trees with bootstrap support
  • distance-calculations - Compare with distance-based methods
  • alignment/alignment-io - Prepare alignments for tree inference

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