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bio-proteomics-spectral-libraries

维护者 FreedomIntelligence · 最近更新 2026年4月1日

Build, manage, and search spectral libraries for proteomics. Use when creating or working with spectral libraries for DIA analysis. Covers DDA-based library generation, predicted libraries (Prosit, DeepLC), and library formats.

OpenClawNanoClaw分析处理复现实验bio-proteomics-spectral-libraries🧬 bioinformatics (gptomics bio-* suite)bioinformatics — proteomics & metabolomicsbuild

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-proteomics-spectral-libraries

维护者
FreedomIntelligence
许可
MIT
最近更新
2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

  • CLI：spectrast (TPP) ，用于 consensus 库 building ，面向 search results。
  • CLI：Prosit/DeepLC ，用于 深度学习-predicted spectral libraries。
  • Python：pandas ，用于 库 format conversion 、 quality filtering。
  • 构建 spectral 库 ，用于 DIA analysis" → Create，filter，、 manage spectral libraries ，面向 DDA experiments 或 predicted spectra ，用于 use in DIA quantification workflows. CLI：spectrast (TPP) ，用于 consensus 库 building ，面向 search results CLI：Prosit/DeepLC ，用于 深度学习-predicted spectral libraries Python：pandas ，用于 库 format conversion 、 quality filtering。
  • spectrast -cN库.splib -cAC search_results.pep.xml。

原始文档

SKILL.md 摘录

Filter library for quality

spectrast -cNfiltered.splib -cAQ library.splib

Convert to other formats

spectrast -cNlibrary.tsv -cM library.splib


## Convert to TSV format

easypqp convert \
    --in library.pqp \
    --out library.tsv \
    --format openswath

适用场景

  • 适合在creating 或 working ，支持 spectral libraries ，用于 DIA analysis时使用。

不适用场景

  • Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。

上游相关技能

  • dia-analysis - Use libraries in DIA workflows
  • peptide-identification - Generate search results for library building
  • data-import - Load MS data for library generation

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