数据与复现生物信息与基因组学FreedomIntelligence/OpenClaw-Medical-Skills数据与复现

bio-read-qc-fastp-workflow

维护者 FreedomIntelligence · 最近更新 2026年4月1日

All-in-one read preprocessing with fastp including adapter trimming, quality filtering, deduplication, base correction, and HTML report generation. Use when preprocessing Illumina data and wanting a single fast tool instead of separate Cutadapt, Trimmomatic, and FastQC steps.

OpenClawNanoClaw分析处理复现实验bio-read-qc-fastp-workflow🧬 bioinformatics (gptomics bio-* suite)bioinformatics — sequencing & read qcall

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-read-qc-fastp-workflow

维护者: FreedomIntelligence
许可: MIT
最近更新: 2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

CLI：fastp -i R1.fq -I R2.fq -o clean_R1.fq -O clean_R2.fq --html report.html。
All-in-one preprocessing tool that handles adapter trimming，quality filtering，deduplication，、 report generation in single pass。
Preprocess FASTQ reads ，支持 fastp" → Run adapter trimming，quality filtering，、 QC reporting in single pass. CLI：fastp -i R1.fq -I R2.fq -o clean_R1.fq -O clean_R2.fq --html report.html。
fastp -i in.fq -o out.fq。

原始文档

SKILL.md 摘录

Adapter Trimming

fastp auto-detects Illumina adapters by default.


## Specify adapters manually

fastp -i in.fq -o out.fq \
      --adapter_sequence AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

## Paired-end with manual adapters

fastp -i R1.fq -I R2.fq -o R1.out.fq -O R2.out.fq \
      --adapter_sequence AGATCGGAAGAGCACACGTCTGAACTCCAGTCA \
      --adapter_sequence_r2 AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT