数据与复现生物信息与基因组学FreedomIntelligence/OpenClaw-Medical-Skills数据与复现

bio-reporting-automated-qc-reports

维护者 FreedomIntelligence · 最近更新 2026年4月1日

Generate automated MultiQC-style reports for omics pipelines.

OpenClawNanoClaw分析处理复现实验bio-reporting-automated-qc-reports🧠 bioos extended suitebioos extended bioinformatics suitegenerate

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-reporting-automated-qc-reports

维护者: FreedomIntelligence
许可: MIT
最近更新: 2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

multiqc results/ -o qc_report/。
multiqc results/ -n my_project_qc。

原始文档

SKILL.md 摘录

Include specific tools only

multiqc results/ --module fastqc --module star


## Supported Tools

MultiQC recognizes outputs from 100+ bioinformatics tools:

| Category | Tools |
|----------|-------|
| Read QC | FastQC, fastp, Cutadapt |
| Alignment | STAR, HISAT2, BWA, Bowtie2 |
| Quantification | featureCounts, Salmon, kallisto |
| Variant Calling | bcftools, GATK |
| Single-cell | CellRanger, STARsolo |

## Configuration

Create `multiqc_config.yaml`:

```yaml
title: "RNA-seq QC Report"
subtitle: "Project XYZ"
intro_text: "QC metrics for all samples"

适用场景

Use bio-reporting-automated-qc-reports ，用于 genomics 、 bioinformatics workflows。
Apply bio-reporting-automated-qc-reports to sequencing，variant，或 omics analysis tasks。