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数据与复现
BI
bio-reporting-quarto-reports
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Build Quarto multi-format reports (HTML/PDF) from analysis code.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-reporting-quarto-reports
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- quarto render report.qmd。
- quarto render report.qmd --to pdf。
原始文档
SKILL.md 摘录
Python Document
{python} import scanpy as sc import matplotlib.pyplot as plt
adata = sc.read_h5ad('data.h5ad') sc.pl.umap(adata, color='leiden') `
R Document
{r} library(DESeq2) dds <- DESeqDataSetFromMatrix(counts, metadata, ~ condition) dds <- DESeq(dds) `
Render with parameters
quarto render report.qmd -P sample:sample2 -P threshold:0.01
适用场景
- Use bio-reporting-quarto-reports ，用于 genomics 、 bioinformatics workflows。
- Apply bio-reporting-quarto-reports to sequencing，variant，或 omics analysis tasks。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
上游相关技能
- reporting/rmarkdown-reports - R-focused alternative
- data-visualization/ggplot2-fundamentals - R visualizations
- workflow-management/snakemake-workflows - Pipeline integration
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