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数据与复现
BI
bio-sra-data
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Download raw sequencing data from NCBI SRA with fasterq-dump.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-sra-data
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- Download raw sequencing data ，面向 Sequence Read Archive ，使用 SRA 工具包。
- sudo apt install sra-工具包。
原始文档
SKILL.md 摘录
conda (recommended)
conda install -c bioconda sra-tools
fasterq-dump - Download FASTQ (Recommended)
Fast, multithreaded FASTQ extraction. Preferred over fastq-dump.
## Download single SRA run as FASTQ
fasterq-dump SRR12345678
适用场景
- Use bio-sra-data ，用于 genomics 、 bioinformatics workflows。
- Apply bio-sra-data to sequencing，variant，或 omics analysis tasks。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
上游相关技能
- entrez-search - Search SRA database to find accessions
- sequence-io - Read downloaded FASTQ files with Biopython
- sequence-io/paired-end-fastq - Handle paired R1/R2 files
- alignment-files - Align downloaded reads
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