Adaptyv
Adaptyv is a cloud laboratory platform that provides automated protein testing and validation services. Submit protein s…
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Access and analyze AlphaFold protein structure predictions. Use when predicted structures are needed for proteins without experimental structures, or for confidence scores (pLDDT).
原始来源
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-structural-biology-alphafold-predictions
技能摘要
原始文档
Database version v4 (current as of 2025). The version number refers to the database release, not the AlphaFold model version.
| File | URL Pattern | Description |
|---|---|---|
| PDB | AF-{id}-F1-model_v4.pdb | Structure coordinates |
| mmCIF | AF-{id}-F1-model_v4.cif | Structure with metadata |
| PAE JSON | AF-{id}-F1-predicted_aligned_error_v4.json | Predicted aligned error |
AlphaFold stores pLDDT scores in the B-factor column.
| pLDDT | Confidence | Interpretation |
|---|---|---|
| >90 | Very high | High accuracy, can be used as experimental |
| 70-90 | Confident | Good backbone, may have sidechain errors |
| 50-70 | Low | Caution, may be disordered |
| <50 | Very low | Likely disordered or wrong |
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