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数据与复现
BI
bio-systems-biology-metabolic-reconstruction
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Reconstruct genome-scale metabolic models from genome annotations.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-systems-biology-metabolic-reconstruction
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- carve genome.faa -o model.xml。
- carve genome.faa -o model.xml --format sbml carve genome.faa -o model.json --format json。
原始文档
SKILL.md 摘录
Gap-fill for specific media
carve genome.faa -o model.xml --gapfill M9
Use diamond instead of blastp (faster)
carve genome.faa -o model.xml --diamond
Specify organism type
carve genome.faa -o model.xml --grampos # Gram-positive carve genome.faa -o model.xml --gramneg # Gram-negative (default)
适用场景
- Use bio-systems-biology-metabolic-reconstruction ，用于 genomics 、 bioinformatics workflows。
- Apply bio-systems-biology-metabolic-reconstruction to sequencing，variant，或 omics analysis tasks。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
上游相关技能
- systems-biology/model-curation - Validate and curate draft models
- systems-biology/flux-balance-analysis - Analyze reconstructed models
- database-access/entrez-fetch - Download genome sequences
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