数据与复现生物信息与基因组学FreedomIntelligence/OpenClaw-Medical-Skills数据与复现

bio-workflow-management-snakemake-workflows

维护者 FreedomIntelligence · 最近更新 2026年4月1日

Create and manage Snakemake reproducible bioinformatics workflows.

OpenClawNanoClaw分析处理复现实验bio-workflow-management-snakemake-workflows🧠 bioos extended suitebioos extended bioinformatics suitecreate

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-workflow-management-snakemake-workflows

技能摘要

2 min

Compatible ，支持 Snakemake 7.x，8.x，、 9.x. ，用于 Snakemake 8.0+，use --executor instead of --cluster。
rule all：input：expand("results/{sample}_counts.txt"，sample=SAMPLES)。
rule align：input：r1 = "data/{sample}_R1.fq.gz"，r2 = "data/{sample}_R2.fq.gz"，index = "ref/genome.fa" output：bam = "aligned/{sample}.bam" threads：8 shell："bwa mem -t {threads} {input.index} {input.r1} {input.r2} | " "samtools sort -@ {threads} -o {output.bam}。

原始文档

samples:

reference: "ref/genome.fa" threads: 8 python

SAMPLES = ["A", "B", "C"] CHROMOSOMES = [str(i) for i in range(1, 23)] + ["X", "Y"]

rule all: input: expand("results/{sample}_{chrom}.vcf", sample=SAMPLES, chrom=CHROMOSOMES)

Use bio-workflow-management-snakemake-workflows ，用于 genomics 、 bioinformatics workflows。
Apply bio-workflow-management-snakemake-workflows to sequencing，variant，或 omics analysis tasks。