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数据与复现
BI
bio-workflow-management-wdl-workflows
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Create WDL workflows for Terra/Cromwell bioinformatics execution.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-workflow-management-wdl-workflows
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- womtool validate workflow.wdl。
- womtool inputs workflow.wdl > inputs.json。
原始文档
SKILL.md 摘录
Run with Cromwell (local)
java -jar cromwell.jar run workflow.wdl -i inputs.json
Run with miniwdl (simpler local runner)
miniwdl run workflow.wdl -i inputs.json
Execution Engines
| Engine | Use Case |
|---|---|
| Cromwell | Full-featured, Google Cloud, AWS, HPC |
| miniwdl | Lightweight local execution |
| Terra | Cloud platform with Cromwell backend |
| AnVIL | NIH cloud platform (Terra-based) |
| dxWDL | DNAnexus platform |
适用场景
- Use bio-workflow-management-wdl-workflows ，用于 genomics 、 bioinformatics workflows。
- Apply bio-workflow-management-wdl-workflows to sequencing，variant，或 omics analysis tasks。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
上游相关技能
- workflow-management/cwl-workflows - CWL alternative
- workflow-management/snakemake-workflows - Python-based alternative
- workflow-management/nextflow-pipelines - Groovy-based alternative
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