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数据与复现
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数据与复现
BI
biomaster-workflows
维护者 FreedomIntelligence · 最近更新 2026年4月1日
BioMaster workflow orchestration for end-to-end bioinformatics analyses.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/biomaster-workflows
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- Orchestrate BioMaster’s multi-agent pipelines (RNA-seq，ChIP-seq，single-cell，Hi-C) ，使用 provided configs 、 repos to deliver reproducible outputs。
- 1. Config prep：Populate YAML ，支持 tool paths，reference genomes，、 workflow selection (rnaseq，chipseq，singlecell，hic). 2. Environment：cd repo && pip install -r requirements.txt (或 container) prior to running. 3. Launch：python repo/run.py --config repo/config.yaml (或 chosen config) 、 monitor progress. 4. Error recovery：Let BioMaster agents retry failing stages；review logs ，用于 missing reference/index files. 5. Output packaging：Collect BAMs/counts/peaks + QC + narrative summary of parameters 、 runtimes。
原始文档
SKILL.md 摘录
Guardrails
- Fail fast when reference files or indices are absent to avoid wasted compute.
- Record tool versions for every stage (alignment, quantification, etc.).
- Require confirmation before deleting intermediates or rerunning destructive steps.
适用场景
- Use biomaster-workflows ，用于 single-cell 或 spatial omics analysis。
- Apply biomaster-workflows to 聚类，integration，或 trajectory workflows。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
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