bio-longread-alignment:Align long reads ,使用 minimap2 ,用于 Oxford Nanopore 、 PacBio data。 支持 various presets ,用于 different…
文献综述
BI
biomni-research-agent
维护者 FreedomIntelligence · 最近更新 2026年4月1日
biomni-research-agent:BioMni research-focused agent ,支持 literature,database,、 analysis integration。
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/biomni-research-agent
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- general-purpose biomedical AI agent capable of executing complex 科研工作流 ,使用 over 150 tools 、 databases。
- Biomni是一个General-Purpose" biomedical agent. Unlike specialized skills (e.g.,just ,用于 folding proteins),Biomni acts as high-level orchestrator that can break down complex open-ended research questions into solvable sub-tasks ,使用 vast 库 of tools。
- Complex Questions:"What are potential drug targets ,用于 Alzheimer's related to mitochondrial dysfunction。
- Multi-Step Research:Tasks requiring literature search,data retrieval,、 analysis in sequence。
- Exploratory Analysis:When exact path to answer isn't known 、 requires "reasoning。
原始文档
SKILL.md 摘录
Core Capabilities
- Tool Use: Access to 150+ tools, 105 software packages, and 59 databases.
- Hypothesis Generation: Can formulate scientific hypotheses and plan experiments to test them.
- Plan & Execute: Breaks down queries into a dependency graph of tasks.
- Database QA: High accuracy (74.4%) in querying biomedical databases.
Workflow
- Query Parsing: The agent analyzes the user's natural language request.
- Tool Selection: It selects relevant tools (e.g., "Search GWAS Catalog", "Run GO Enrichment", "Fetch Uniprot Data").
- Execution Loop:
- Step 1: Get data.
- Step 2: Analyze data.
- Step 3: Refine plan based on intermediate results.
- Synthesis: Combines all findings into a comprehensive answer.
Example Usage
User: "Identify genes associated with Type 2 Diabetes that are also expressed in the pancreas and have approved drugs."
Agent Action:
- Tool:
OpenTargets-> Get T2D associated genes. - Tool:
GTEx-> Filter for high expression in Pancreas. - Tool:
DrugBank-> Intersect with drug targets. - Result: Returns a list of genes (e.g., GLP1R, DPP4) and their drugs.
适用场景
- **Complex Questions**:"What are potential drug targets ,用于 Al。
不适用场景
- Do not treat this catalog entry as substitute ,用于 full upstream workflow。
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