BI
数据与复现
bio-blast-searches
bio-blast-searches：运行 BLAST searches against local 或 remote databases ，用于 sequence homology。
FreedomIntelligence/OpenClaw-Medical-Skills查看
数据与复现
BI
BioServices
维护者 K-Dense Inc. · 最近更新 2026年4月1日
BioServices是一个Python package providing programmatic access to approximately 40 bioinformatics web services 、 databases。 获取 biological data，perform cross-database queries，map identifiers，analy。
原始来源
K-Dense-AI/claude-scientific-skills
https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/bioservices
- 维护者
- K-Dense Inc.
- 许可
- GPLv3 license
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- BioServices是一个Python package providing programmatic access to approximately 40 bioinformatics web services 、 databases. Retrieve biological data，perform cross-database queries，map identifiers，analyze sequences，、 integrate multiple biological resources in Python workflows. package handles both REST 、 SOAP/WSDL protocols transparently。
- results = u.search("ZAP70_HUMAN"，frmt="tab"，columns="id，genes，organism")。
原始文档
SKILL.md 摘录
When to Use This Skill
This skill should be used when:
- Retrieving protein sequences, annotations, or structures from UniProt, PDB, Pfam
- Analyzing metabolic pathways and gene functions via KEGG or Reactome
- Searching compound databases (ChEBI, ChEMBL, PubChem) for chemical information
- Converting identifiers between different biological databases (KEGG↔UniProt, compound IDs)
- Running sequence similarity searches (BLAST, MUSCLE alignment)
- Querying gene ontology terms (QuickGO, GO annotations)
- Accessing protein-protein interaction data (PSICQUIC, IntactComplex)
- Mining genomic data (BioMart, ArrayExpress, ENA)
- Integrating data from multiple bioinformatics resources in a single workflow
1. Protein Analysis
Retrieve protein information, sequences, and functional annotations:
from bioservices import UniProt
u = UniProt(verbose=False)
## Retrieve FASTA sequence
sequence = u.retrieve("P43403", "fasta")
适用场景
- Retrieving protein sequences，annotations，或 structures ，面向 UniProt，PDB，Pfam。
不适用场景
- Do not assume this entry replaces original database documentation 或 API notes。
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