Detect horizontal gene transfer events in microbial genomes.
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数据与复现
CO
COBRApy
维护者 K-Dense Inc. · 最近更新 2026年4月1日
COBRApy is a Python library for constraint-based reconstruction and analysis (COBRA) of metabolic models, essential for systems biology research. Work with genome-scale metabolic models, perform computational simulations of cellular metabolism, conduct metabolic engineering analyses, and predict phenotypic behaviors.
原始来源
K-Dense-AI/claude-scientific-skills
https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/cobrapy
- 维护者
- K-Dense Inc.
- 许可
- GPL-2.0 license
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- COBRApy是一个Python 库 ，用于 constraint-based reconstruction 、 analysis (COBRA) of metabolic models，essential ，用于 systems biology research. Work ，支持 genome-scale metabolic models，perform computational 模拟s of cellular metabolism，conduct metabolic engineering analyses，、 predict phenotypic behaviors。
- model = load_model("textbook") # E. coli core model model = load_model("ecoli") # Full E. coli model model = load_model("salmonella")。
原始文档
SKILL.md 摘录
Core Capabilities
COBRApy provides comprehensive tools organized into several key areas:
1. Model Management
Load existing models from repositories or files:
from cobra.io import load_model
## Load from files
from cobra.io import read_sbml_model, load_json_model, load_yaml_model
model = read_sbml_model("path/to/model.xml")
model = load_json_model("path/to/model.json")
model = load_yaml_model("path/to/model.yml")
python
from cobra.io import write_sbml_model, save_json_model, save_yaml_model
write_sbml_model(model, "output.xml") # Preferred format
save_json_model(model, "output.json") # For Escher compatibility
save_yaml_model(model, "output.yml") # Human-readable
适用场景
- Use COBRApy ，用于 genomics 、 bioinformatics workflows。
- Apply COBRApy to sequencing，variant，或 omics analysis tasks。
- Use cobrapy ，用于 medicinal chemistry 、 drug-discovery work。
- Apply cobrapy to compound，target，或 screening workflows。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
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