BG
数据与复现
bgpt-paper-search
bgpt-paper-search：BGPT是一个remote MCP server that searches curated database of scientific papers built ，面向 raw experimenta…
K-Dense-AI/claude-scientific-skills查看
数据与复现
DE
deepTools
维护者 K-Dense Inc. · 最近更新 2026年4月1日
deepTools是一个comprehensive suite of Python command-line tools designed ，用于 processing 、 analy。
原始来源
K-Dense-AI/claude-scientific-skills
https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/deeptools
- 维护者
- K-Dense Inc.
- 许可
- BSD license
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- Convert BAM alignments to normalized coverage tracks (bigWig/bedGraph)。
- Quality control assessment (fingerprint，correlation，coverage)。
- Sample comparison 、 correlation analysis。
- Heatmap 、 profile plot generation around genomic features。
- Enrichment analysis 、 peak region visualization。
原始文档
SKILL.md 摘录
When to Use This Skill
This skill should be used when:
- File conversion: "Convert BAM to bigWig", "generate coverage tracks", "normalize ChIP-seq data"
- Quality control: "check ChIP quality", "compare replicates", "assess sequencing depth", "QC analysis"
- Visualization: "create heatmap around TSS", "plot ChIP signal", "visualize enrichment", "generate profile plot"
- Sample comparison: "compare treatment vs control", "correlate samples", "PCA analysis"
- Analysis workflows: "analyze ChIP-seq data", "RNA-seq coverage", "ATAC-seq analysis", "complete workflow"
- Working with specific file types: BAM files, bigWig files, BED region files in genomics context
Quick Start
For users new to deepTools, start with file validation and common workflows:
1. Validate Input Files
Before running any analysis, validate BAM, bigWig, and BED files using the validation script:
This checks file existence, BAM indices, and format correctness.
适用场景
- **File conversion**："Convert BAM to bigWig"，"generate coverage tracks"，"normali。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
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