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DNAnexus Integration

维护者 K-Dense Inc. · 最近更新 2026年4月1日

DNAnexus Integration：DNAnexus是一个cloud 平台 ，用于 biomedical 数据分析 、 genomics。 构建 、 deploy apps/applets，manage data objects，run workflows，、 use dxpy Python SDK ，用于 genomics pipeline development 、 execution。

Claude CodeOpenClawNanoClaw分析处理复现实验dnanexus-integrationcloud-biomedintegrationcloud platforms for genomics & biomedical data

原始来源

K-Dense-AI/claude-scientific-skills

https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/dnanexus-integration

维护者
K-Dense Inc.
许可
Unknown
最近更新
2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

  • DNAnexus是一个cloud 平台 ，用于 biomedical 数据分析 、 genomics. Build 、 deploy apps/applets，manage data objects，run workflows，、 use dxpy Python SDK ，用于 genomics pipeline development 、 execution。
  • input_file = dxpy.upload_local_file("sample.fastq"，project="project-xxxx")。

原始文档

SKILL.md 摘录

When to Use This Skill

This skill should be used when:

  • Creating, building, or modifying DNAnexus apps/applets
  • Uploading, downloading, searching, or organizing files and records
  • Running analyses, monitoring jobs, creating workflows
  • Writing scripts using dxpy to interact with the platform
  • Setting up dxapp.json, managing dependencies, using Docker
  • Processing FASTQ, BAM, VCF, or other bioinformatics files
  • Managing projects, permissions, or platform resources

Core Capabilities

The skill is organized into five main areas, each with detailed reference documentation:

1. App Development

Purpose: Create executable programs (apps/applets) that run on the DNAnexus platform.

Key Operations:

  • Generate app skeleton with dx-app-wizard
  • Write Python or Bash apps with proper entry points
  • Handle input/output data objects
  • Deploy with dx build or dx build --app
  • Test apps on the platform

Common Use Cases:

  • Bioinformatics pipelines (alignment, variant calling)
  • Data processing workflows
  • Quality control and filtering
  • Format conversion tools

Reference: See references/app-development.md for:

  • Complete app structure and patterns
  • Python entry point decorators
  • Input/output handling with dxpy
  • Development best practices
  • Common issues and solutions

适用场景

  • Creating，building，或 modifying DNAnexus apps/applets。
  • Uploading，downloading，searching，或 organi。

不适用场景

  • Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。

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