AD
数据与复现
Adaptyv
Adaptyv is a cloud laboratory platform that provides automated protein testing and validation services. Submit protein s…
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数据与复现
ES
esm
维护者 K-Dense Inc. · 最近更新 2026年4月1日
ESM provides state-of-the-art protein language models for understanding, generating, and designing proteins. This skill enables working with two model families: ESM3 for generative protein design across sequence, structure, and function, and ESM C for efficient protein representation learning and embeddings.
原始来源
K-Dense-AI/claude-scientific-skills
https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/esm
- 维护者
- K-Dense Inc.
- 许可
- MIT license
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- ESM provides state-of- -art protein language models ，用于 understanding，generating，、 designing proteins. This skill enables working ，支持 two model families：ESM3 ，用于 generative protein design across sequence，structure，、 function，、 ESM C ，用于 efficient protein representation learning 、 embeddings。
- model：ESM3InferenceClient = ESM3.from_pretrained("esm3-sm-open-v1").to("cuda")。
原始文档
SKILL.md 摘录
1. Protein Sequence Generation with ESM3
Generate novel protein sequences with desired properties using multimodal generative modeling.
When to use:
- Designing proteins with specific functional properties
- Completing partial protein sequences
- Generating variants of existing proteins
- Creating proteins with desired structural characteristics
Basic usage:
from esm.models.esm3 import ESM3
from esm.sdk.api import ESM3InferenceClient, ESMProtein, GenerationConfig
## Create protein prompt
protein = ESMProtein(sequence="MPRT___KEND") # '_' represents masked positions
## Generate completion
protein = model.generate(protein, GenerationConfig(track="sequence", num_steps=8))
print(protein.sequence)
python
from esm.sdk.forge import ESM3ForgeInferenceClient
from esm.sdk.api import ESMProtein, GenerationConfig
适用场景
- Use esm in 科研工作流 aligned ，支持 this subject area。
- Follow upstream documentation ，用于 full working procedure。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
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