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instrument-data-to-allotrope
维护者 FreedomIntelligence · 最近更新 2026年4月1日
instrument-data-to-allotrope：Convert laboratory instrument output files (PDF，CSV，Excel，TXT) to Allotrope Simple Model (ASM) JSON format 或 flattened 2D CSV。 Use this skill when scientists need to standardize instrument data ，用于 LIMS systems，data lakes，或 downstream analysis。
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/instrument-data-to-allotrope
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- Convert instrument files into standardized Allotrope Simple Model (ASM) format ，用于 LIMS upload，data lakes，或 handoff to data engineering teams。
- pip install allotropy pandas openpyxl pdfplumber --break-system-packages。
原始文档
SKILL.md 摘录
Workflow Overview
- Detect instrument type from file contents (auto-detect or user-specified)
- Parse file using allotropy library (native) or flexible fallback parser
- Generate outputs:
- ASM JSON (full semantic structure)
- Flattened CSV (2D tabular format)
- Python parser code (for data engineer handoff)
- Deliver files with summary and usage instructions
When Uncertain: If you're unsure how to map a field to ASM (e.g., is this raw data or calculated? device setting or environmental condition?), ask the user for clarification. Refer to
references/field_classification_guide.mdfor guidance, but when ambiguity remains, confirm with the user rather than guessing.
Core conversion
from allotropy.parser_factory import Vendor from allotropy.to_allotrope import allotrope_from_file
Convert with allotropy
asm = allotrope_from_file("instrument_data.csv", Vendor.BECKMAN_VI_CELL_BLU)
适用场景
- Use instrument-data-to-allotrope in 科研工作流 aligned ，支持 this subject area。
- Follow upstream documentation ，用于 full working procedure。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
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