Adaptyv
Adaptyv is a cloud laboratory platform that provides automated protein testing and validation services. Submit protein s…
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Fetch and analyze protein structures from RCSB PDB. Use this skill when: (1) Need to download a structure by PDB ID, (2) Search for similar structures, (3) Prepare target for binder design, (4) Extract specific chains or domains, (5) Get structure metadata. For sequence lookup, use uniprot. For binder design workflow, use binder-design.
原始来源
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/pdb
技能摘要
原始文档
curl -o 1alu.cif "https://files.rcsb.org/download/1ALU.cif"
## Using RCSB API
```python
import requests
def fetch_pdb(pdb_id: str, format: str = "pdb") -> str:
"""Fetch structure from RCSB PDB."""
url = f"https://files.rcsb.org/download/{pdb_id}.{format}"
response = requests.get(url)
response.raise_for_status()
return response.text
def fetch_fasta(pdb_id: str) -> str:
"""Fetch sequence in FASTA format."""
url = f"https://www.rcsb.org/fasta/entry/{pdb_id}"
return requests.get(url).text
## Example usage
pdb_content = fetch_pdb("1ALU")
with open("1ALU.pdb", "w") as f:
f.write(pdb_content)
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