数据与复现蛋白结构与设计FreedomIntelligence/OpenClaw-Medical-Skills数据与复现
PD

pdb

维护者 FreedomIntelligence · 最近更新 2026年4月1日

Fetch and analyze protein structures from RCSB PDB. Use this skill when: (1) Need to download a structure by PDB ID, (2) Search for similar structures, (3) Prepare target for binder design, (4) Extract specific chains or domains, (5) Get structure metadata. For sequence lookup, use uniprot. For binder design workflow, use binder-design.

OpenClawNanoClaw分析处理复现实验pdb🔬 omics & computational biologyprotein structure & designfetch

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/pdb

维护者
FreedomIntelligence
许可
MIT
最近更新
2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

  • curl -o 1alu.pdb "https://files.rcsb.org/download/1ALU.pdb。

原始文档

SKILL.md 摘录

Download mmCIF

curl -o 1alu.cif "https://files.rcsb.org/download/1ALU.cif"


## Using RCSB API

```python
import requests

def fetch_pdb(pdb_id: str, format: str = "pdb") -> str:
    """Fetch structure from RCSB PDB."""
    url = f"https://files.rcsb.org/download/{pdb_id}.{format}"
    response = requests.get(url)
    response.raise_for_status()
    return response.text

def fetch_fasta(pdb_id: str) -> str:
    """Fetch sequence in FASTA format."""
    url = f"https://www.rcsb.org/fasta/entry/{pdb_id}"
    return requests.get(url).text

## Example usage

pdb_content = fetch_pdb("1ALU")
with open("1ALU.pdb", "w") as f:
    f.write(pdb_content)

适用场景

  • Use pdb in 科研工作流 aligned ,支持 this subject area。
  • Follow upstream documentation ,用于 full working procedure。

不适用场景

  • Do not rely on this catalog entry alone ,用于 installation 或 maintenance details。

相关技能

相关技能

返回目录
AD
数据与复现蛋白结构与设计

Adaptyv

Adaptyv is a cloud laboratory platform that provides automated protein testing and validation services. Submit protein s…

Claude CodeOpenClaw分析处理
K-Dense-AI/claude-scientific-skills查看
AL
数据与复现蛋白结构与设计

alphafold

Validate protein designs using AlphaFold2 structure prediction. Use this skill when: (1) Validating designed sequences f…

OpenClawNanoClaw分析处理
FreedomIntelligence/OpenClaw-Medical-Skills查看
AL
数据与复现蛋白结构与设计

AlphaFold DB

AlphaFold DB is a public repository of AI-predicted 3D protein structures for over 200 million proteins, maintained by D…

Claude CodeOpenClaw分析处理
K-Dense-AI/claude-scientific-skills查看
AN
数据与复现蛋白结构与设计

antibody-design-agent

Antibody design: epitope mapping, CDR engineering, bispecific construction.

OpenClawNanoClaw分析处理
FreedomIntelligence/OpenClaw-Medical-Skills查看