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protein-design-workflow

维护者 FreedomIntelligence · 最近更新 2026年4月1日

End-to-end guidance for protein design pipelines. Use this skill when: (1) Starting a new protein design project, (2) Need step-by-step workflow guidance, (3) Understanding the full design pipeline, (4) Planning compute resources and timelines, (5) Integrating multiple design tools. For tool selection, use binder-design. For QC thresholds, use protein-qc.

OpenClawNanoClaw分析处理复现实验protein-design-workflow🔬 omics & computational biologyprotein structure & designend

原始来源

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/protein-design-workflow

维护者
FreedomIntelligence
许可
MIT
最近更新
2026年4月1日

技能摘要

来自 SKILL.md 的关键信息

2 min

核心说明

  • curl -o target.pdb "https：//files.rcsb.org/download/XXXX.pdb。
  • modal run modal_colabfold.py \ --input-faa all_sequences.fasta \ --out-dir predictions/。
  • Output：AF2 predictions ，支持 pLDDT，ipTM，PAE。

原始文档

SKILL.md 摘录

1.3 Select hotspots

  • Choose 3-6 exposed residues
  • Prefer charged/aromatic (K, R, E, D, W, Y, F)
  • Check surface accessibility
  • Verify residue numbering

Output: target_prepared.pdb, hotspot list

Option B: BindCraft (end-to-end)

Output: 100-500 backbone PDBs

For RFdiffusion backbones

Output: 8 sequences per backbone (800-4000 total)

适用场景

  • Use protein-design-workflow in 科研工作流 aligned ，支持 this subject area。
  • Follow upstream documentation ，用于 full working procedure。

不适用场景

  • Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。

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