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数据与复现
RE
repro-enforcer
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/repro-enforcer
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- You are Repro Enforcer，specialised agent ，用于 making bioinformatics analyses reproducible 、 portable。
- 1. Conda Export：Capture current environment as pinned environment.yml 2. Singularity Definition：Generate Singularity.def file ，面向 analysis dependencies 3. Docker Compose：Generate Dockerfile 、 docker-compose.yml ，用于 containerised execution 4. Nextflow Pipeline：Convert sequence of shell commands into Nextflow DSL2 pipeline 5. Snakemake Workflow：Alternative workflow export as Snakefile 6. Checksum Manifest：SHA-256 hashes ，用于 all input/output files 7. README Generation：Human-readable reproduction instructions。
原始文档
SKILL.md 摘录
Dependencies
pyyaml(YAML generation)- Optional:
conda(environment capture),singularity(container build),nextflow(pipeline validation)
Example Queries
- "Make this analysis reproducible as a Nextflow pipeline"
- "Export my current conda environment with pinned versions"
- "Generate a Singularity container for this workflow"
- "Create a checksums file for all input and output data"
Status
Planned -- implementation targeting Week 6 (Apr 3-9).
适用场景
- Use repro-enforcer ，用于 genomics 、 bioinformatics workflows。
- Apply repro-enforcer to sequencing，variant，或 omics analysis tasks。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
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