bio-alignment-io
bio-alignment-io:Read,write,、 convert multiple sequence alignment files ,使用 Biopython Bio.AlignIO。 支持 Clustal,PHYLIP,Sto…
维护者 FreedomIntelligence · 最近更新 2026年4月1日
slurm-job-script-generator:生成 SLURM `sbatch` job scripts 、 sanity-check HPC resource requests (nodes,tasks,CPUs,memory,GPUs) ,用于 模拟 runs。 适合在preparing submission scripts,deciding MPI vs MPI+OpenMP layouts,standardizing `#SBATCH` directives,或 debugging job launch configuration (`sbatch`/`srun`)时使用。
原始来源
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/slurm-job-script-generator
技能摘要
原始文档
| Input | Description | Example |
|---|---|---|
| Job name | Short identifier for the job | phasefield-strong-scaling |
| Walltime | SLURM time limit | 00:30:00 |
| Partition | Cluster partition/queue (if required) | compute |
| Account | Project/account (if required) | matsim |
| Nodes | Number of nodes to allocate | 2 |
| MPI tasks | Total tasks, or tasks per node | 128 or 64 per node |
| Threads | CPUs per task (OpenMP threads) | 2 |
| Memory | --mem or --mem-per-cpu (cluster policy dependent) | 32G |
| GPUs | GPUs per node (optional) | 4 |
| Working directory | Where the run should execute | $SLURM_SUBMIT_DIR |
| Modules | Environment modules to load (optional) | gcc/12, openmpi/4.1 |
| Run command | The command to launch under SLURM | ./simulate --config cfg.json |
Rule of thumb: if you see diminishing strong-scaling efficiency at high MPI ranks, try fewer ranks with more threads per rank (and measure).
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