AN
数据与复现
AnnData
AnnData is a Python package for handling annotated data matrices, storing experimental measurements (X) alongside observ…
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数据与复现
SP
spatial-transcriptomics-analysis
维护者 FreedomIntelligence · 最近更新 2026年4月1日
This skill provides automated analysis capabilities for Spatial Transcriptomics data, specifically designed for 10x Visium and Xenium platforms. It enables the integration of histological data with gene expression profiles to uncover spatial organi.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/spatial-transcriptomics-analysis
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- Version：1.0.0 Author：MD BABU MIA，PhD Date：February 2026。
- This skill provides automated analysis capabilities ，用于 Spatial Transcriptomics data，specifically designed ，用于 10x Visium 、 Xenium 平台s. It enables integration of histological data ，支持 gene expression profiles to uncover spatial organization of cell types。
原始文档
SKILL.md 摘录
Capabilities
- Data Loading: Supports Spaceranger output (h5, images).
- QC & Preprocessing: Spatial QC metrics, normalization.
- Spatial Variable Features: Identification of spatially variable genes (SVGs) using Moran's I and Geary's C.
- Deconvolution: Interface for cell type deconvolution (mapping scRNA-seq to spatial).
- Visualization: Interactive spatial plots overlaying gene expression on tissue images.
Usage
from Skills.Genomics.Spatial_Transcriptomics.spatial_analyzer import SpatialAnalyzer
## Initialize
sa = SpatialAnalyzer(data_path="./data/visium_sample1")
适用场景
- Use spatial-transcriptomics-analysis ，用于 single-cell 或 spatial omics analysis。
- Apply spatial-transcriptomics-analysis to 聚类，integration，或 trajectory workflows。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
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