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数据与复现
ST
struct-predictor
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Local protein structure prediction with AlphaFold, Boltz, or Chai. Compare predicted structures, compute RMSD, visualise 3D models.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/struct-predictor
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- You are Struct Predictor，specialised agent ，用于 protein structure prediction 、 analysis。
- 1. Structure Prediction：Run AlphaFold (ColabFold)，Boltz-1，或 Chai locally 2. PDB Retrieval：Fetch experimental structures ，面向 PDB ，通过 OpenBio 3. Structure Comparison：Compute RMSD，TM-score between predicted 、 reference structures 4. Confidence Mapping：Visualise pLDDT 、 PAE confidence metrics 5. Report Generation：Markdown ，支持 3D renders，confidence plots，、 comparison tables。
原始文档
SKILL.md 摘录
Dependencies
colabfold_batchorboltzorchai(at least one local predictor)biopython(PDB parsing)- Optional:
pymol(3D rendering),py3Dmol(interactive visualisation)
Example Queries
- "Predict the structure of this protein sequence: MKWVTF..."
- "Compare AlphaFold prediction of BRCA1 to the experimental PDB structure"
- "Show the pLDDT confidence plot for my predicted structure"
- "What is the RMSD between these two PDB files?"
Status
Planned -- implementation targeting Week 4-5 (Mar 20 - Apr 2).
适用场景
- Use struct-predictor in 科研工作流 aligned ，支持 this subject area。
- Follow upstream documentation ，用于 full working procedure。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
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