AN
数据与复现
AnnData
AnnData is a Python package for handling annotated data matrices, storing experimental measurements (X) alongside observ…
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数据与复现
TC
tcga-bulk-data-preprocessing-with-omicverse
维护者 FreedomIntelligence · 最近更新 2026年4月1日
Follow this skill to recreate the preprocessing routine from [`t_tcga.ipynb`](../../omicverse_guide/docs/Tutorials-bulk/t_tcga.ipynb). It automates loading TCGA downloads, generating raw/normalised matrices, initialising metadata, and running survival analyses through `ov.bulk.pyTCGA`.
原始来源
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/tcga-preprocessing
- 维护者
- FreedomIntelligence
- 许可
- MIT
- 最近更新
- 2026年4月1日
技能摘要
来自 SKILL.md 的关键信息
核心说明
- Follow this skill to recreate preprocessing routine ，面向 t_tcga.ipynb. It automates loading TCGA downloads，generating raw/normalised matrices，initialising metadata，、 running survival analyses through ov.bulk.pyTCGA。
- Confirm user has：。
- gdc_sample_sheet.<date>.tsv ，面向 TCGA Sample Sheet export。
- decompressed gdc_download_xxxxx directory containing expression archives。
- clinical.cart.<date> directory ，支持 clinical XML/JSON files。
原始文档
SKILL.md 摘录
Examples
- "Read my TCGA OV download, initialise metadata, and plot MYC survival curves using DESeq-normalised counts."
- "Reload a saved AnnData file, attach survival annotations, and export the updated
.h5ad." - "Run survival analysis for all genes and store the enriched dataset."
适用场景
- Use tcga-bulk-data-preprocessing-，支持-omicverse ，用于 single-cell 或 spatial omics analysis。
- Apply tcga-bulk-data-preprocessing-，支持-omicverse to 聚类，integration，或 trajectory workflows。
不适用场景
- Do not rely on this catalog entry alone ，用于 installation 或 maintenance details。
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