文献综述

bio-longread-alignment

bio-longread-alignment：Align long reads ，使用 minimap2 ，用于 Oxford Nanopore 、 PacBio data。 支持 various presets ，用于 different…

bio-machine-learning-atlas-mapping

bio-machine-learning-atlas-mapping：映射 query cells to reference atlases ，支持 scANVI 或 Symphony。

bio-methylation-bismark-alignment

bio-methylation-bismark-alignment：Bisulfite sequencing read alignment ，使用 Bismark ，支持 bowtie2/hisat2。 Handles genome pre…

bio-microbiome-taxonomy-assignment

bio-microbiome-taxonomy-assignment：Taxonomic 分类 of ASVs ，使用 reference databases like SILVA，GTDB，或 UNITE。 Covers naive Ba…

bio-phasing-imputation-reference-panels

bio-phasing-imputation-reference-panels：Select 、 prepare reference panels (1KGP，HRC，TOPMed) ，用于 imputation。

bio-read-alignment-bwa-alignment

bio-read-alignment-bwa-alignment：Align short reads to reference genome ，支持 BWA-MEM。

bio-read-qc-contamination-screening

bio-read-qc-contamination-screening：检测 sample contamination 、 cross-species reads ，使用 FastQ Screen。 Screen reads against…

bio-reference-operations

bio-reference-operations：Download，index，、 manage reference genome FASTA files。

biomni-research-agent

biomni-research-agent：BioMni research-focused agent ，支持 literature，database，、 analysis integration。

BioPython

BioPython：Biopython是一个comprehensive set of freely available Python tools ，用于 biological computation。 It provides functio…

bioRxiv

bioRxiv：This skill provides efficient Python-based tools ，用于 searching 、 retrieving preprints ，面向 bioRxiv database。 It e…

deep-research

deep-research：Execute autonomous multi-step deep research on any topic。 Triggers on "deep research"，"research on"，"inves…

deep-research-swarm

deep-research-swarm：Multi-agent swarm ，用于 deep scientific research ，支持 parallel literature synthesis。

gene-database

gene-database：NCBI Gene是一个comprehensive database integrating gene information ，面向 diverse species。 It provides nomenclat…

get-paper

Search Google Scholar via Chrome DevTools MCP, let the user select a paper, and retrieve its BibTeX entry. 通过 Chrome Dev…

leads-literature-mining

leads-literature-mining：LEADS literature mining：automated extraction of biological findings ，面向 papers。

Literature Review

Literature Review：Conduct systematic，comprehensive literature reviews following rigorous academic methodology。 检索 multip…

opentargets-database

opentargets-database：The Open Targets Platform是一个comprehensive resource ，用于 systematic identification 、 prioritization o…

parallel-web

parallel-web：This skill provides access to **Parallel Web Systems** APIs ，用于 web search，deep research，、 content extracti…

pdf

pdf：This guide covers essential PDF processing operations ，使用 Python libraries 、 command-line tools。 用于 advanced feature…

pdf

pdf：This guide covers essential PDF processing operations ，使用 Python libraries 、 command-line tools。 用于 advanced feature…

ppw:literature

Search academic literature via Semantic Scholar MCP, select papers interactively, and generate verified BibTeX entries.…

ppw:repo-to-paper

Scan an experiment repo and generate a complete paper outline (H1/H2/H3) with user approval checkpoints at each level, t…

ppw:update

Sync local skills and references from the GitHub repo. Triggers on update skills, sync skills, 更新技能, 同步技能

research-literature

research-literature：Research literature management：search，organize，、 synthesize scientific papers。

scikit-learn

scikit-learn：This skill provides comprehensive guidance ，用于 机器学习 tasks ，使用 scikit-learn，industry-standard Python 库 ，用于 c…

search-strategy

search-strategy：Design systematic search strategies ，用于 scientific literature 、 databases。

USPTO

USPTO provides specialized APIs ，用于 patent 、 trademark data。 检索 patents by keywords/inventors/assignees，retrieve examina…

XLSX

XLSX：user may ask you to create，edit，或 analy。